U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX4122944: GSM3154212: trm5-1 mutant Rep 2 (tRNA); Arabidopsis thaliana; ncRNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 3.2M spots, 635.5M bases, 334.1Mb downloads

Submitted by: NCBI (GEO)
Study: Arabidopsis TRM5 encodes a nuclear-localised tRNA guanine-N1-methyltransferase and is important for plant growth
show Abstracthide Abstract
We show that trm5 plants have less m1G in tRNAs, a slower leaf initiation rate, delayed flowering, and reduced primary root length. Late flowering correlates with reduced transcription of floral activators CO, FT, SOC1 and AP1. We also show that TRM5 methylates tRNA position 37 of several nucleus-encoded tRNA species, trm5 plants have reduced m1G and TRM5 is localized to the nucleus. Our findings highlight the importance of the post-transcriptional tRNA modification m1G37 in plant growth and development. Overall design: Identification of m1G methylation at position 37 of Arabidopsis thaliana tRNAs and Differential Expression analysis of wild type Col-0 Ecotype and trm5-1 mutant.
Sample: trm5-1 mutant Rep 2 (tRNA)
SAMN09257867 • SRS3337569 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: ncRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: PAIRED
Construction protocol: Total RNA was isolated from wild type and trm5 10-day-old Arabidopsis seedlings using the Spectrum Plant total RNA kit (SIGMA-ALDRICH) and contaminating DNA removed using DNase I (SIGMA-ALDRICH). To enrich for tRNAs, 10μg of total RNA was separated on a 10% polyacrylamide gel, the region containing 65-85 nts was removed and RNA was purified as previously described in Burgess et al. 2015. Libraries were prepared as per manufacturer's instruction with NEB Ultradirectional RNA library kit
Experiment attributes:
GEO Accession: GSM3154212
Links:
Runs: 1 run, 3.2M spots, 635.5M bases, 334.1Mb
Run# of Spots# of BasesSizePublished
SRR72160213,177,313635.5M334.1Mb2019-08-28

ID:
5608505

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...